User contributions
From Zhang Laboratory
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- 17:19, 22 September 2012 (diff | hist) . . (0) . . MCarts Documentation (→Steps to install the software)
- 14:05, 22 September 2012 (diff | hist) . . (-1) . . MCarts Documentation (→Download)
- 13:33, 22 September 2012 (diff | hist) . . (0) . . MCarts Documentation (→Download)
- 13:33, 22 September 2012 (diff | hist) . . (-2) . . MCarts Documentation (→Download)
- 13:32, 22 September 2012 (diff | hist) . . (+16) . . MCarts Documentation (→Download)
- 09:29, 21 September 2012 (diff | hist) . . (+1) . . Resources (→Software)
- 09:29, 21 September 2012 (diff | hist) . . (0) . . Main Page
- 21:33, 20 September 2012 (diff | hist) . . (-2) . . Quantas Documentation (→Generate bedGraph files for visualization in UCSC genome browser)
- 21:32, 20 September 2012 (diff | hist) . . (-2) . . Quantas Documentation (→Quantify gene expression)
- 21:32, 20 September 2012 (diff | hist) . . (-2) . . Quantas Documentation (→Summarize alternative splicing results and perform statistical tests)
- 21:32, 20 September 2012 (diff | hist) . . (-6) . . Quantas Documentation (→Quantify alternative splicing)
- 21:31, 20 September 2012 (diff | hist) . . (-6) . . Quantas Documentation (→Inferring transcript structure between paired end reads)
- 21:31, 20 September 2012 (diff | hist) . . (-9) . . Quantas Documentation (→Mapping RNA-seq reads to the reference genome and exon junctions)
- 21:30, 20 September 2012 (diff | hist) . . (-2) . . Quantas Documentation (→Important assumptions)
- 19:37, 20 September 2012 (diff | hist) . . (-2) . . MCarts Documentation (→Prediction)
- 19:37, 20 September 2012 (diff | hist) . . (-2) . . MCarts Documentation (→Model training)
- 19:37, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Prerequisite)
- 19:37, 20 September 2012 (diff | hist) . . (-4) . . MCarts Documentation (→Installation)
- 19:32, 20 September 2012 (diff | hist) . . (+119) . . NDDcluster
- 19:31, 20 September 2012 (diff | hist) . . (+2) . . NDDcluster
- 19:30, 20 September 2012 (diff | hist) . . (+85) . . NDDcluster
- 19:28, 20 September 2012 (diff | hist) . . (+12) . . NDDcluster
- 19:27, 20 September 2012 (diff | hist) . . (+109) . . NDDcluster
- 19:26, 20 September 2012 (diff | hist) . . (0) . . N File:NDDcluster fig4.png (current)
- 19:26, 20 September 2012 (diff | hist) . . (0) . . N File:NDDcluster toy.gif (current)
- 19:25, 20 September 2012 (diff | hist) . . (0) . . N File:NDDcluster fig3.png (current)
- 19:24, 20 September 2012 (diff | hist) . . (+38) . . NDDcluster
- 19:24, 20 September 2012 (diff | hist) . . (0) . . N File:NDDcluster logo.png (current)
- 19:23, 20 September 2012 (diff | hist) . . (+13) . . NDDcluster
- 19:22, 20 September 2012 (diff | hist) . . (+3) . . NDDcluster (→Introduction)
- 19:21, 20 September 2012 (diff | hist) . . (+1,900) . . N NDDcluster (Created page with "=Introduction= This algorithm is based on a nonparametric estimation of the normalized density derivative (NDD) and the local convexity of the density distribution function, b...")
- 19:19, 20 September 2012 (diff | hist) . . (+13) . . Resources (→Software)
- 19:19, 20 September 2012 (diff | hist) . . (+115) . . Resources (→Software)
- 19:08, 20 September 2012 (diff | hist) . . (-19) . . OLego
- 19:07, 20 September 2012 (diff | hist) . . (+74) . . OLego
- 19:06, 20 September 2012 (diff | hist) . . (+114) . . OLego
- 19:03, 20 September 2012 (diff | hist) . . (+1) . . OLego
- 19:03, 20 September 2012 (diff | hist) . . (-1) . . OLego
- 19:02, 20 September 2012 (diff | hist) . . (+25) . . OLego
- 19:02, 20 September 2012 (diff | hist) . . (+16) . . Resources (→Software)
- 19:01, 20 September 2012 (diff | hist) . . (0) . . N File:Olego.logo.png (current)
- 18:59, 20 September 2012 (diff | hist) . . (+544) . . N OLego (Created page with "'''Introduction''' OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a...")
- 18:56, 20 September 2012 (diff | hist) . . (-2) . . OLego Documentation v1.0.6 (→Versions)
- 18:56, 20 September 2012 (diff | hist) . . (+74) . . OLego Documentation v1.0.6 (→What is OLego?)
- 18:55, 20 September 2012 (diff | hist) . . (+1,397) . . OLego Documentation v1.0.6 (→junc format)
- 18:54, 20 September 2012 (diff | hist) . . (-1) . . OLego Documentation v1.0.6 (→junc format)
- 18:53, 20 September 2012 (diff | hist) . . (0) . . OLego Documentation v1.0.6 (→junc format)
- 18:53, 20 September 2012 (diff | hist) . . (+19) . . OLego Documentation v1.0.6 (→junc format)
- 18:53, 20 September 2012 (diff | hist) . . (+517) . . OLego Documentation v1.0.6 (→junc format)
- 18:49, 20 September 2012 (diff | hist) . . (+891) . . OLego Documentation v1.0.6 (→SAM format)
- 18:48, 20 September 2012 (diff | hist) . . (-1) . . OLego Documentation v1.0.6 (→SAM format)
- 18:47, 20 September 2012 (diff | hist) . . (+517) . . OLego Documentation v1.0.6 (→SAM format)
- 18:41, 20 September 2012 (diff | hist) . . (+402) . . OLego Documentation v1.0.6 (→regression_model_gen)
- 18:40, 20 September 2012 (diff | hist) . . (+428) . . OLego Documentation v1.0.6 (→regression_model_gen)
- 18:39, 20 September 2012 (diff | hist) . . (+203) . . OLego Documentation v1.0.6 (→bed2junc.pl)
- 18:37, 20 September 2012 (diff | hist) . . (+4) . . OLego Documentation v1.0.6 (→bed2junc.pl)
- 18:37, 20 September 2012 (diff | hist) . . (+317) . . OLego Documentation v1.0.6 (→bed2junc.pl)
- 18:35, 20 September 2012 (diff | hist) . . (+405) . . OLego Documentation v1.0.6 (→sam2bed.pl)
- 18:34, 20 September 2012 (diff | hist) . . (+770) . . OLego Documentation v1.0.6 (→sam2bed.pl)
- 18:32, 20 September 2012 (diff | hist) . . (+15) . . OLego Documentation v1.0.6 (→Other useful scripts)
- 18:31, 20 September 2012 (diff | hist) . . (+460) . . OLego Documentation v1.0.6 (→Other useful scripts)
- 18:30, 20 September 2012 (diff | hist) . . (+1) . . OLego Documentation v1.0.6 (→Other useful scripts)
- 18:29, 20 September 2012 (diff | hist) . . (+15) . . OLego Documentation v1.0.6 (→Running OLego)
- 18:28, 20 September 2012 (diff | hist) . . (+822) . . OLego Documentation v1.0.6 (→Other useful scripts)
- 18:25, 20 September 2012 (diff | hist) . . (+878) . . OLego Documentation v1.0.6 (→Running OLego)
- 18:22, 20 September 2012 (diff | hist) . . (+2,246) . . OLego Documentation v1.0.6 (→Running OLego)
- 18:14, 20 September 2012 (diff | hist) . . (-2) . . OLego Documentation v1.0.6 (→Running OLego)
- 18:13, 20 September 2012 (diff | hist) . . (-26) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 18:13, 20 September 2012 (diff | hist) . . (-26) . . OLego Documentation v1.0.6 (→Running OLego)
- 18:05, 20 September 2012 (diff | hist) . . (+3,746) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 17:54, 20 September 2012 (diff | hist) . . (-1) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 17:52, 20 September 2012 (diff | hist) . . (+71) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 17:51, 20 September 2012 (diff | hist) . . (-15) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 17:50, 20 September 2012 (diff | hist) . . (+847) . . OLego Documentation v1.0.6 (→Build the index for the genome sequence)
- 17:36, 20 September 2012 (diff | hist) . . (+4) . . OLego Documentation v1.0.6 (→Usage)
- 17:36, 20 September 2012 (diff | hist) . . (+314) . . OLego Documentation v1.0.6 (→Installation)
- 17:34, 20 September 2012 (diff | hist) . . (-238) . . OLego Documentation v1.0.6
- 17:33, 20 September 2012 (diff | hist) . . (+2,802) . . N OLego Documentation v1.0.6 (Created page with "OLego: short or long RNA-seq read mapping to discover exon junction Jie Wu (wuj@cshl.edu), Chaolin Zhang (czhang@rockefeller.edu) Updated on Aug. 9th, 2012 We are updating ...")
- 16:13, 20 September 2012 (diff | hist) . . (-15) . . MediaWiki:Sidebar
- 16:10, 20 September 2012 (diff | hist) . . (+6) . . MCarts Documentation (→Prediction)
- 15:19, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Additional options)
- 15:19, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Prediction)
- 15:19, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Model training)
- 15:18, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Model training)
- 15:18, 20 September 2012 (diff | hist) . . (+18) . . MCarts Documentation (→Steps to install the software)
- 14:44, 20 September 2012 (diff | hist) . . (+1,153) . . MCarts Documentation (→Additional options)
- 14:41, 20 September 2012 (diff | hist) . . (+119) . . MCarts Documentation (→Prediction)
- 14:40, 20 September 2012 (diff | hist) . . (+229) . . MCarts Documentation (→Prediction)
- 14:38, 20 September 2012 (diff | hist) . . (+7) . . MCarts Documentation (→Running jobs in parallel)
- 14:38, 20 September 2012 (diff | hist) . . (+363) . . MCarts Documentation (→Additional options)
- 14:32, 20 September 2012 (diff | hist) . . (+5) . . MCarts Documentation (→More tweaking)
- 14:32, 20 September 2012 (diff | hist) . . (+18) . . MCarts Documentation (→Prediction)
- 14:26, 20 September 2012 (diff | hist) . . (+553) . . MCarts Documentation (→Model training)
- 14:19, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Model training)
- 14:19, 20 September 2012 (diff | hist) . . (+6) . . MCarts Documentation (→Model training)
- 14:19, 20 September 2012 (diff | hist) . . (+177) . . MCarts Documentation (→Prediction)
- 14:16, 20 September 2012 (diff | hist) . . (+57) . . MCarts Documentation (→Get started)
- 14:15, 20 September 2012 (diff | hist) . . (+216) . . MCarts Documentation (→Model training)
- 14:13, 20 September 2012 (diff | hist) . . (+1) . . MCarts Documentation (→Model training)
- 14:11, 20 September 2012 (diff | hist) . . (+6) . . MCarts Documentation (→Model training)
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