Difference between revisions of "Resources"
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==Software== | ==Software== | ||
| + | *'''CIMS''': Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis | ||
*'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | *'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | ||
| − | |||
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | *'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | ||
| − | *''' | + | *'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]]) |
==Database== | ==Database== | ||
Revision as of 09:01, 20 September 2012
Software
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- OLego: A tool for fast and accurate mapping of exon-junction reads (documentation, download)
- Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
Database
- Splicebase: a database of alternative splicing and regulation