Difference between revisions of "MCarts Documentation"
From Zhang Laboratory
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Revision as of 14:40, 19 September 2012
Prediction of clustered RNA-binding protein motif sites in the mammalian genome
Chaolin Zhang,1,* Kuang-Yung Lee2,3, Maurice S. Swanson2, Robert B. Darnell1,*
1 Laboratory of Molecular Neuro-Oncology, Howard Hughes Medical Institute, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA 2 Department of Molecular Genetics and Microbiology and the Center for NeuroGenetics, University of Florida, College of Medicine, Gainesville, FL 32610, USA 3 Department of Neurology, Chang Gung Memorial Hospital, Keelung, Taiwan
* Corresponding authors
Introduction
mCarts is a hidden Markov model (HMM) based methods to predict clusters RNA motif sites
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Source code:
czplib, mCarts, PatternMatch, RegExpMatch
Library data:
mm9 (15 Gb compressed /109 Gb uncompressed)
hg18 (15 Gb compressed /212 Gb uncompressed)