Resources

From Zhang Laboratory

Revision as of 19:55, 6 June 2015 by Czhang (Talk | contribs) (Software)

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Software

  • CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis (documentation, download)
    • scripts for cross linking induced truncation site (CITS) analysis are now included.
  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
  • NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
  • Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)

Datasets