Resources

Software

CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis (documentation, download)
- scripts for cross linking induced truncation site (CITS) analysis are now included.
mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)