Difference between revisions of "Resources"

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We are committed to making resources generated in the lab, including datasets and software tools, available for the research communities.
 
We are committed to making resources generated in the lab, including datasets and software tools, available for the research communities.

Revision as of 16:06, 22 December 2022


Resources.png

We are committed to making resources generated in the lab, including datasets and software tools, available for the research communities.

Software

Software2.png
  • CTK: CLIP Tool Kit, previously known as CIMS (documentation, download, user group)
  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • mCross: modeling RBP binding specificity by registering protein-RNA crosslink sites (site)
  • mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
  • NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
  • Splicescope: prediction of neuronal maturation stages using splicing profile (site)
  • Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)

Datasets

Datset.jpg
  • Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
  • Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.