Difference between revisions of "Resources"

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Revision as of 16:03, 22 December 2022


Resources.png

We are committed to making resources generated in the lab, including datasets and software tools, available for the research communities.

Software

Software2.png

  • CTK: CLIP Tool Kit, previously known as CIMS (documentation, download, user group)
  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • mCross: modeling RBP binding specificity by registering protein-RNA crosslink sites (site)
  • mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
  • NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
  • Splicescope: prediction of neuronal maturation stages using splicing profile (site)
  • Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)

Datasets

Datset.jpg

  • Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
  • Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.
Retrieved from "https://zhanglab.c2b2.columbia.edu/index.php?title=Resources&oldid=2359"