Difference between revisions of "Resources"
From Zhang Laboratory
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==Software== | ==Software== | ||
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*'''Splicescope''': prediction of neuronal maturation stages using splicing profile ([[Splicescope|site]]) | *'''Splicescope''': prediction of neuronal maturation stages using splicing profile ([[Splicescope|site]]) | ||
*'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | *'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | ||
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==Datasets== | ==Datasets== | ||
Revision as of 11:00, 22 December 2022
Software
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download, user group)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mCross: modeling RBP binding specificity by registering protein-RNA crosslink sites (site)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Splicescope: prediction of neuronal maturation stages using splicing profile (site)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)
Datasets
- Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
- Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.