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Difference between revisions of "Members"
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| 2022 Lab summer BBQ (10 year lab anniversary & celebration of Melissa's new faculty position) | | 2022 Lab summer BBQ (10 year lab anniversary & celebration of Melissa's new faculty position) |
Revision as of 10:08, 22 December 2022
2022 Lab summer BBQ (10 year lab anniversary & celebration of Melissa's new faculty position)
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PI
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Chaolin Zhang
Associate Professor, Department of Systems Biology, Department of Biochemistry and Molecular Biophysics, Motor Neuron Center
Email: cz2294 (at) columbia (dot) edu
Curriculum Vitae
Personal page (old!)
Chaolin is currently an Associate Professor with joint appointments in Department of Systems Biology, Department of Biochemistry and Molecular Biophysics, and Motor Neuron Center at Columbia University Irving Medical Center. Before he joined Columbia, he performed PhD studies at Cold Spring Harbor Laboratory in computational biology and then Postdoc work at Rockefeller University. Before that he obtained bachelor's degree studying Automation at Tsinghua University (Beijing). As an engineer-converted biologist, he has a deep interest in understanding gene regulatory logics. From the beginning of his academic endeavor, he decided to tackle the RNA code, i.e., how specific protein-RNA interactions determine the gene output in health and disease conditions, which remains the focus of the lab. Chaolin is a winner of NIH Pathway to Independence (K99/R00, 2011) and Maximizing Investigators' Research Award (MIRA/R35, 2022).
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Current Lab Members
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Georgia Dermentzaki (09/2021-present), Postdoc
Email: gn2267 (at) cumc (dot) columbia (dot) edu
- Ph.D., Neuroscience, University of Athens; Biomedical Research Foundation of the Academy of Athens, Athens, Greece
Georgia joined the Zhang lab as an Associate Research Scientist in September 2021 after working as a Postodoctoral Research Scientist in Serge Przedborski’s and Francesco Lotti’s lab in the Motor Neuron Center at Columbia Medical Center. There she focused her research in studying mechanisms of motor neuron degeneration in ALS and SMA with particular interest in RNA modifications / RNA metabolism. In addition, she worked in the Project ALS Therapeutic Core as the Lead Scientist for the Viral Unit where she developed and optimized novel assays for AAV production targeting the CNS and PNS in ALS mice models for preclinical studies. Her current research is focusing on the functional impact of neuron-type specific alternative splicing in the brain and RNA-based therapeutics for brain-related disorders. She also enjoys cooking Greek food (being Greek), long walks in Central Park, and yoga/pilates.
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Jessica Estrada (11/2022-present), Technician
Email: je2673 (at) cumc (dot) columbia (dot) edu
- BA, Chemistry, Stony Brook University
Jessica received her B.A from Stony Brook University in Chemistry and is a Technician in the Zhang Lab. She assists on various projects in the lab while developing a research focus, and plans on pursing a PhD in the biomedical sciences. In her free time, she likes to go on hikes and cook for friends and family.
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Brian Joseph (11/2021-present), Postdoc (joint with Hynek Witchterle lab)
Email: bj2468 (at) cumc (dot) columbia (dot) edu
- Ph.D., Gerstner Sloan Kettering Graduate School of Biomedical Sciences
Brian joined the Zhang and Wichterle labs as a postdoctoral fellow in November 2021 after a brief research experience in Kevin Eggan’s motor neuron lab at Harvard. He completed his PhD with Eric Lai at the Sloan Kettering Institute in NYC focusing on the biology of cotranscriptional RNA processing mechanisms. He plans to explore RNA metabolism in neurons and hopes to identify novel vulnerabilities that can be the basis for therapeutic intervention. Brian is currently an ALS scholar in therapeutics.
A native Pakistani, Brian is obsessed with cricket and biryani. He is also an avid runner who still believes the PRs are yet to come.
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Suvrajit Maji (07/2022-present), Postdoc
Email:sm4073 (at) cumc (dot) columbia (dot) edu
- Ph.D.,Carnegie Mellon University
Suvrajit is received his Bachelor's and Master's degree in Mathematics and Computing from the Indian Institute of Technology, Kharagpur, India. He then received his Ph.D. degree in computational biology from Carnegie Mellon University under the mentorship of his thesis advisor Dr. Marcel P. Bruchez. His thesis topic was single-molecule localization microscopy and super-resolution reconstruction of biological structures using generative models. He moved to Columbia University to continue his postdoctoral research work under the mentorship of Dr. Joachim Frank, when he focused on developing advanced mathematical, computer vision, and machine learning techniques for studying the structure and dynamics of molecular machines such as the Ribosomes and determining high-resolution 3D structures from 2D cryo-EM image datasets. His current research focuses on computational methods development, application, and analysis to study RNA-protein binding interactions using CLIP sequencing datasets. He is also involved in developing and applying machine learning & deep learning methods to study RNA-protein complex structures.
Personal page
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Daniel Moakley (06/2018-), Graduate Student
Email: dfm2129 (at) cumc (dot) columbia (dot) edu
- Ph.D. student, Integrative Program, Columbia University
Before coming to Columbia, Dan earned Bachelor’s and Master’s degrees from Wesleyan University, where he studied the maturation of ESC-derived interneurons in Laura Grabel’s laboratory. Then, he worked with Brian Wainger at Massachusetts General Hospital, where he focused on the electrophysiology of ESC-derived motor neurons. Dan is interested in molecular underpinnings of the immense cell type diversity in the brain. His work leverages both computational and experimental techniques to examine neuron type-specific alternative RNA splicing regulation. He uses the reanalysis of large, publicly available data sets to identify potential regulators of splicing differences across neuron types. These hypotheses are then tested in embryonic stem cell (ESC)-derived neurons.
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Paola Rinchetti (05/2022-), Postdoc (joint with Francesco Lotti lab)
Email: pr2485 (at) cumc (dot) columbia (dot) edu
- Ph.D., University of Milan
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Yocelyn Recinos (06/2018-), Graduate Student
Email: yr2330 (at) cumc (dot) columbia (dot) edu
- Ph.D. student, Integrative Program, Columbia University
- NSF GRFP awardee (2019)
Yocelyn received her B.S. in biological sciences from the University of California, Irvine and is a Ph.D. candidate in the Integrated Cellular, Molecular, and Biomedical program at Columbia University. For her thesis research, she is focused on developing high-throughput screening technologies to understand the role of RNA regulation in the context of alternative splicing and disease. Her work is supported by the NSF GRFP (2019). She also enjoys running in Central Park and practicing hot yoga.
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Xiaojian Wang (06/2016-), Lab manager
Email: xw2006 (at) columbia (dot) edu
- MS, Molecular, Cellular and Developmental biology, the Ohio State University
- BM, Basic Medical Sciences, Beijing Medical University, Beijing, China
Before coming to work at Columbia, Xiaojian earned her Bachelor’s and Master’s degrees from Beijing Medical University and the Ohio State University, respectively. At CUIMC, she worked as supporting staff and lab manager in several labs. She joined the Zhang lab in 2016, and has been providing support on both molecular biology experiments and mouse work, as well as daily lab operations. In her free time, Xiaojian enjoys cooking, watching baseball games, and spending time with her family.
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Yuchen Xu (02/2022-), Master Student
Email: yx2709 (at) cumc (dot) columbia (dot) edu
- Public Health in Biostatistics, Columbia University
Yuchen received his B.E degree in bioengineering from Northeastern University (China) in 2018. During his undergraduate study, he was previously involved in research work to study the relationship between TDP-43 protein and Lactoferrin treatment for the Alzheimer’s Disease. He is now a master student biostatistics at Columbia Mailman School of Public Health. In the Zhang lab, Yuchen studies spatial regulation of alternative splicing in the brain. In leisure times, Yuchen likes hiking or visiting coffee shops in NYC.
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Tim Yeh (09/2022-), Postdoc
Email: yy2722 (at) cumc (dot) columbia (dot) edu
- PhD, Department of Biology, Zukerman Mind Brain Behavior Institute, Columbia University
Tim received his Ph.D. in Biological Sciences from Columbia University (2022).
Throughout his scientific career, he has been interested in understanding how the brain
works and developing treatment. His graduate research focused on auditory processing
in the brain and sensorimotor interaction. As a postdoc in the Zhang lab, Tim hopes to
investigate the roles of RNA splicing in normal brain functions and neurological diseases
using novel research methods such as gene editing tools and sequencing technologies.
When he is not doing science, he likes to play tennis and ping pong. He is also a foodie
who enjoys eating pizza!
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Alumni
Name/Position in the Lab
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Position When Exiting
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Current Position
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Melissa Campbell (09/2019-11/2022), Postdoc
Email: mmc2259 (at) cumc (dot) columbia (dot) edu
- M.D./Ph.D., Department of Genetics, NYU
- NIH K99 awardee (2021)
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Assistant Professor, UCSD
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Huijuan Feng (8/2016-12/2021), Postdoc
Email: hf2304 (at) columbia (dot) edu
- Ph.D., MOE Key Laboratory of Bioinformatics, Bioinformatics Division, TNLIST & Department of Automation, Tsinghua University
- Visiting Ph.D. student (1/2015-1/2016)
Personal page
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Associate Professor, Fudan University
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Suying Bao (06/2017-06/2021), Postdoc
Email: sb4045 (at) columbia (dot) edu
- Ph.D., School of Biomedical Sciences, The University of Hong Kong
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Bioinformatics Manager, Regeneron
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Dmytro Ustianenko (01/2015-05/2021), Postdoc
Email: du2145 (at) columbia (dot) edu
- Ph.D., Biomolecular Chemistry, Masaryk University, Central European Institute of Technology, Brno, Czech Republic
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Blavatnik Fellow in Life Science Entrepreneurship, Yale University
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Associate, Flagship Pioneering
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Brittany Phillips (05/2018-05/2019), Postdoc
Email: bp2563 (at) cumc (dot) columbia (dot) edu
- Ph.D., Genetics and Molecular Biology, Emory University
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Medical Writer, Chrysalis Medical Communications
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Medical Writing Senior Manager, Amgen
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Sebastien Weyn (08/2013-02/2018), Graduate Student
Ph.D. student, Integrative Program, Columbia University
Email: smw2185 (at) columbia (dot) edu
- Titus M Coan Award for Excellence in Research (2018)
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Bioinformatics Scientist, Stoke Therapeutics.
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Principal Scientist, Bioinformatics, Fosun Pharma USA Inc.
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Martin Jacko (08/2013-07/2017), Graduate Student
Ph.D. student (joint with Wichterle lab), Department of Pathobiology & Molecular Medicine, Columbia University
Email: mj2577 (at) columbia (dot) edu
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Postdoc, Alice Ting Lab, Stanford University
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CEO, Aperture Therapeutics
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Qinghong Yan (02/2013-02/2015), Postdoc
Ph.D., Department of Neurobiology & Behavior, Stony Brook University
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Scientist, Amgen
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CSO, Leverna Therapeutics
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Yong Zhang (04/2013-11/2014), Postdoc
Ph.D., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
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Postdoc, Xuemei Chen lab, UC Riverside
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Jie Wu (01/2013-08/2013)
Visiting Ph.D. student, Cold Spring Harbor Laboratory / Applied Maths and Statistics, Stony Brook University
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Bioinformatics Scientist, BioMicro Center, MIT
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Associate Director, Bioinformatics at Accent Therapeutics, Inc.
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Lily Wang (07/2020-09/2020), Undergraduate Research Assistant
Undergraduate student, Mathematics/Statistics, Columbia University
Email: hw2744 (at) columbia (dot) edu
- Amgen Summer Research Program Award (2020)
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Meghna Gopalan (06/2022-08/2022), Undergrad Summer Research Assistant
Email: mg4166 (at) barnard (dot) edu
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Lydia Wu (10/2021-06/2022), Undergrad Research Assistant
Email: lw2892 (at) columbia (dot) edu
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Lekha Yesantharao (09/2017-12/2019), Undergraduate Research Assistant
Undergraduate student, Department of Engineering, Columbia University
Email: lvy2002 (at) columbia (dot) edu
- Simons Foundation Undergraduate Summer Research Program Award (2018)
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Medical School, Johns Hopkins School of Medicine
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Justin Wong (06/2017-05/2019), Undergraduate Research Assistant
Undergraduate student, Department of Computer Science, Columbia University
Email: justin (dot) wong (at) columbia (dot) edu
- Simons Foundation Undergraduate Summer Research Program Award (2017)
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Graduate Student, UC Berkeley
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Yingzhi Qian (06/2016-06/2018), Computational Biologist
Email: yq2139 (at) columbia (dot) edu
- M.A., Statistics, Columbia University
- B.Sc., Applied Mathematics, Fudan University
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Research Scientist, NYU Lagone Health
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Model Risk Management, Barclays
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Helene Lovett (06/2017-08/2017), Undergraduate Research Assistant
Undergraduate student, Department of Neurobiology, Harvard University
Email: helenelovett (at) college (dot) Harvard (dot) edu
- SURF/Amgen Fellowship (2017)
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Ankeeta Shah (08/2015-05/2017), Volunteer
Undergraduate student, Barnard College
Email: abs2218 (at) barnard (dot) edu
- SURF/Amgen Fellowship (2016)
- Goldwater Scholarship (2016)
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Graduate Student, University of Chicago
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Jonah Lee (05/2015-01/2017), Volunteer
Undergraduate student, Columbia College
Email: jl3910 (at) columbia (dot) edu
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Andrew Arditi (Volunteer, 09/2016-12/2016)
Columbia College
Email: ava2123 (at) columbia (dot) edu
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Jingxian You (Volunteer, 07/2016-09/2016)
Fudan University
Email: ykevingrox (at) gmail (dot) com
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Jiaye Li (05/2016-08/2016)
MA in Biotechnology, Columbia University
Volunteer
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Co-Founder, EleGo Education
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Kevin Huynh (10/2015-7/2016)
- BS, Biochemistry/Cell Biology, UCSD
- MS, Biology, UCSD
Technician
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MD program, UCSF
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Resident Physician, UCSF
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Joy Pai ( 09/2013-05/2016)
Undergraduate student, Departments of Biological Sciences and Computer Science, Columbia University
- Harvard/MIT HST Summer Institute Fellowship (2015)
- SURF/Amgen Fellowship (2014)
Undergraduate Research Assistant
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Bioinformatics specialist, Michel Russenzweig lab, Rockefeller University
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Graduate Student, Stanford University
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Kernyu Park (07/2015-10/2015)
Departments of Biological Sciences and Computer Science, Columbia University
Undergraduate Research Assistant
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