Difference between revisions of "Resources"
From Zhang Laboratory
| Line 6: | Line 6: | ||
*'''NDDcluster''': nonparametric "shape free" clustering algorithm based on normalized density derivatives ([[NDDcluster|site]]) | *'''NDDcluster''': nonparametric "shape free" clustering algorithm based on normalized density derivatives ([[NDDcluster|site]]) | ||
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | *'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | ||
| + | *'''Splicescope''': prediction of neuronal maturation stages using splicing profile ([[Splicescope|site]]) | ||
*'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | *'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | ||
Revision as of 16:54, 24 May 2018
Software
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Splicescope: prediction of neuronal maturation stages using splicing profile (site)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)
Datasets
- Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
- Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.