Difference between revisions of "Resources"
From Zhang Laboratory
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==Datasets== | ==Datasets== | ||
| − | *[[Cortex AS]]: | + | *[[Cortex AS]]: Cortex_AS|A database of known and novel AS events in the brain |
*[[Autism D-score]]: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression. | *[[Autism D-score]]: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression. | ||
Revision as of 09:21, 14 November 2016
Software
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)
Datasets
- Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
- Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.