Difference between revisions of "Resources"
From Zhang Laboratory
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*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]]) | *'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]]) | ||
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | *'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | ||
| + | *CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis | ||
==Database== | ==Database== | ||
Revision as of 08:00, 20 September 2012
Software
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
- OLego: A tool for fast and accurate mapping of exon-junction reads (documentation, download)
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
Database
- Splicebase: a database of alternative splicing and regulation