Data and motif summary of RBP YBX3

RBP summary

RBP Name: YBX3
RBP description: Y-Box Binding Protein 3
UniProt ID: P16989
Entrez Gene: 8531
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm):
x(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 15574349 Peaks: 122463
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1401 (CIMS, deletion) ; 1884 (CIMS, insertion); 41963 (CIMS, substitution); 64260 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.YBX3.0
  • GTCATCA
  • GTCACCA
  • GTCAACA
  • GTCACCG
  • GTCATCT
  • 891.2568077 15504 0.65 (65/100) 0.001758821
    2 K562.YBX3.1
  • TGTCACC
  • TGTCAGC
  • TGTCAAC
  • AGTCAAC
  • TATCAAC
  • 818.2211776 13888 0.661538462 (43/65) 0.006251273