Data and motif summary of RBP XRN2

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RBP summary

RBP Name: XRN2
RBP description: 5'-3' Exoribonuclease 2
UniProt ID: Q9H0D6
Entrez Gene: 22803
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 5412615 Peaks: 19223
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 734 (CIMS, deletion) ; 1058 (CIMS, insertion); 14177 (CIMS, substitution); 4934 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.XRN2.0
  • GGGGCGC
    		•  106.4648285 224 0.444444444 (8/18) 0.759658813
    1 K562.XRN2.1
  • GGGCGCT
    		•  77.26595523 111 0.238095238 (5/21) 0.99640131
    1 K562.XRN2.2
  • GGGCCCC
    		•  78.27415182 143 0.6 (9/15) 0.303619385
    1 K562.XRN2.6
  • CGGGGCG
    		•  106.9149041 202 0.333333333 (4/12) 0.927001953
    2 K562.XRN2.4
  • CGGTCCC
    		•  57.23479716 70 0.523809524 (11/21) 0.5
    2 K562.XRN2.7
  • GGGTCCG
    		•  76.75183019 122 0.407407407 (11/27) 0.876105718
    3 K562.XRN2.3
  • CCCGGGT
  • CCCGGGG
    		•  96.99315292 251 0.472222222 (17/36) 0.691140341
    3 K562.XRN2.5
  • CCGGGCT
    		•  70.7784829 91 0.619047619 (13/21) 0.191655159
    4 K562.XRN2.8
  • TGGCCTG
    		•  85.47867756 158 0.375 (9/24) 0.924205184