Data and motif summary of RBP U2AF2

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RBP summary

RBP Name: U2AF2
RBP description: U2 Small Nuclear RNA Auxiliary Factor 2
UniProt ID: P26368
Entrez Gene: 11338
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 10752131 Peaks: 89888
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1550 (CIMS, deletion) ; 1678 (CIMS, insertion); 22208 (CIMS, substitution); 38457 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.U2AF2.0
  • TTTCAGG
    		•  375.8765691 2258 0.529411765 (9/17) 0.5
    1 K562.U2AF2.3
  • CTTTCAG
    		•  339.5479374 2028 0.5 (11/22) 0.584094048
    2 K562.U2AF2.1
  • TCTAGGT
    		•  206.0423362 737 0.5 (9/18) 0.592735291
    2 K562.U2AF2.5
  • TTCTAGG
    		•  319.9296882 1612 0.277777778 (5/18) 0.984558105
    3 K562.U2AF2.2
  • TTCTTCC
  • TTCTCCC
    		•  863.0375538 14244 0.6875 (11/16) 0.105056763
    3 K562.U2AF2.6
  • TCTTCTT
    		•  694.6183067 8159 0.590909091 (13/22) 0.261733532
    4 K562.U2AF2.7
  • TTTCTCC
    		•  755.0817983 9529 0.666666667 (10/15) 0.150878906
    5 K562.U2AF2.4
  • TCCACAG
  • TTCACAG
    		•  294.9150585 1448 0.523809524 (11/21) 0.5