Data and motif summary of RBP U2AF1

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RBP summary

RBP Name: U2AF1
RBP description: U2 Small Nuclear RNA Auxiliary Factor 1
UniProt ID: Q01081
Entrez Gene: 7307
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCCHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4278859 Peaks: 29051
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 816 (CIMS, deletion) ; 1071 (CIMS, insertion); 9337 (CIMS, substitution); 8652 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.U2AF1.0
  • TCTAGGT
    		•  126.4774826 271 0.333333333 (1/3) 0.875
    1 K562.U2AF1.2
  • TTCTAGG
  • TCCTAGG
    		•  166.9966896 522 0.5 (3/6) 0.65625
    2 K562.U2AF1.1
  • TTTCAGG
    		•  191.6161979 585 0.5 (3/6) 0.65625
    3 K562.U2AF1.4
  • TTCACAG
  • TCCACAG
  • CCCACAG
    		•  144.8844131 446 0.666666667 (2/3) 0.5
    4 K562.U2AF1.3
  • TTCTTCC
    		•  324.380019 1693 0.8 (4/5) 0.1875
    4 K562.U2AF1.5
  • TCTTCTT
    		•  318.6909072 1566 0.5 (1/2) 0.75
    5 K562.U2AF1.6
  • TTTCTCC
    		•  335.9961074 1773 1 (2/2) 0.25