Data and motif summary of RBP TROVE2

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RBP summary

RBP Name: TROVE2
RBP description: TROVE Domain Family Member 2
UniProt ID: P10155
Entrez Gene: 6738
Species: Homo Sapiens
Protein domains: TROVEx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 8468802 Peaks: 13586
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1142 (CIMS, deletion) ; 2626 (CIMS, insertion); 19039 (CIMS, substitution); 8243 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TROVE2.0
  • GACGCTA
    		•  34.18887692 19 0.714285714 (5/7) 0.2265625
    1 K562.TROVE2.6
  • ACGCTAG
    		•  29.17633293 10 0.8 (4/5) 0.1875
    2 K562.TROVE2.4
  • CACTAGT
    		•  35.19658303 23 0.416666667 (5/12) 0.806152344
    3 K562.TROVE2.2
  • CGCGAAT
    		•  32.06266503 19 0 (0/4) 1
    4 K562.TROVE2.7
  • ATAAGCG
    		•  37.58564489 25 0.777777778 (7/9) 0.08984375
    5 K562.TROVE2.5
  • CGTAACG
    		•  22.80392186 5 0.666666667 (2/3) 0.5
    6 K562.TROVE2.1
  • GTTGCTC
    		•  60.98059101 66 0.636363636 (7/11) 0.274414063
    6 K562.TROVE2.3
  • TATGCTC
    		•  64.96163065 69 0.714285714 (10/14) 0.089782715
    6 K562.TROVE2.8
  • GATGCTT
    		•  62.93060409 80 0.444444444 (8/18) 0.759658813
    7 K562.TROVE2.9
  • CGCTCTT
    		•  70.68038957 86 0.5 (6/12) 0.612792969