Data and motif summary of RBP TRA2A

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RBP summary

RBP Name: TRA2A
RBP description: Transformer 2 Alpha Homolog
UniProt ID: Q13595
Entrez Gene: 29896
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4693577 Peaks: 27484
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 972 (CIMS, deletion) ; 1288 (CIMS, insertion); 12695 (CIMS, substitution); 4651 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TRA2A.0
  • GAAGAAA
  • CAAGAAA
    		•  122.1209553 366 0.5 (5/10) 0.623046875
    1 K562.TRA2A.1
  • AAGAACA
  • AAGAACC
  • AAGAACT
  • AAGAGCA
    		•  126.3392756 483 0.416666667 (5/12) 0.806152344
    1 K562.TRA2A.3
  • AAGAAAG
    		•  109.9440985 281 0.5 (2/4) 0.6875
    1 K562.TRA2A.4
  • AGAAGCA
  • AGAAGAA
    		•  144.142323 536 0.571428571 (4/7) 0.5
    2 K562.TRA2A.2
  • TGGAAGA
    		•  104.4193462 215 0.7 (7/10) 0.171875