Data and motif summary of RBP TNRC6A

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RBP summary

RBP Name: TNRC6A
RBP description: Trinucleotide Repeat Containing 6A
UniProt ID: Q8NDV7
Entrez Gene: 27327
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 6321939 Peaks: 15547
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 778 (CIMS, deletion) ; 1654 (CIMS, insertion); 14426 (CIMS, substitution); 5776 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TNRC6A.0
  • TTGCACA
    		•  135.796333 254 0.538461538 (7/13) 0.5
    2 K562.TNRC6A.4
  • ACTGACA
    		•  71.61087598 80 0.533333333 (8/15) 0.5
    3 K562.TNRC6A.1
  • ACACACT
    		•  180.6580423 418 0.4 (2/5) 0.8125
    3 K562.TNRC6A.2
  • ACACTCA
    		•  170.8010481 357 0.555555556 (5/9) 0.5
    3 K562.TNRC6A.3
  • CACACAT
  • CACACAC
  • CATACAC
  • CGCACAC
    		•  288.7565281 1651 0 (0/2) 1
    4 K562.TNRC6A.5
  • GCATACA
    		•  156.6643958 271 0.25 (1/4) 0.9375
    5 K562.TNRC6A.6
  • AAACGCG
    		•  28.63977679 13 0.333333333 (1/3) 0.875