Data and motif summary of RBP TBRG4

  1. Home
  2. RBP > TBRG4

RBP summary

RBP Name: TBRG4
RBP description: Transforming Growth Factor Beta Regulator 4
UniProt ID: Q969Z0
Entrez Gene: 9238
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4637371 Peaks: 7133
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 842 (CIMS, deletion) ; 1014 (CIMS, insertion); 10185 (CIMS, substitution); 2903 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TBRG4.0
  • ATAGCGA
    		•  31.90274351 13 0.444444444 (4/9) 0.74609375
    1 K562.TBRG4.5
  • ATCCCTA
    		•  34.22388544 26 0.75 (3/4) 0.3125
    2 K562.TBRG4.7
  • TTAAGCG
    		•  51.89227154 24 0.5 (2/4) 0.6875
    2 K562.TBRG4.8
  • CGGTTAA
    		•  28.80781947 11 0.428571429 (3/7) 0.7734375
    3 K562.TBRG4.1
  • CGTAATT
    		•  40.27342436 23 0.727272727 (8/11) 0.11328125
    4 K562.TBRG4.2
  • GACAATT
    		•  38.37521509 23 0.625 (5/8) 0.36328125
    5 K562.TBRG4.3
  • CTTTTCG
    		•  75.42548775 93 0.4 (2/5) 0.8125
    6 K562.TBRG4.6
  • AAACGGC
    		•  32.39952984 14 0.8 (4/5) 0.1875
    7 K562.TBRG4.4
  • GCGTGTC
    		•  39.63434217 22 0.142857143 (1/7) 0.9921875
    7 K562.TBRG4.9
  • GATAGGC
    		•  36.98612466 25 0.583333333 (7/12) 0.387207031