Data and motif summary of RBP TARDBP

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RBP summary

RBP Name: TARDBP
RBP description: TAR DNA Binding Protein
UniProt ID: Q13148
Entrez Gene: 23435
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		x(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 3626221 Peaks: 32948
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 238 (CIMS, deletion) ; 596 (CIMS, insertion); 4507 (CIMS, substitution); 14693 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TARDBP.0
  • TGAATGA
  • TGAATGG
    		•  600.2531468 5395 0.6875 (22/32) 0.02505123
    2 K562.TARDBP.1
  • GTATGTG
  • GTGTGTG
  • GTGTATG
  • GTGAATG
  • ATGAATG
  • ATGTGTG
    		•  1238.034433 14668 0.666666667 (2/3) 0.5
    2 K562.TARDBP.2
  • TGTGTGA
  • TGTGTGT
    		•  1305.021512 13658 1 (2/2) 0.25