Data and motif summary of RBP SRSF7

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RBP summary

RBP Name: SRSF7
RBP description: Serine And Arginine Rich Splicing Factor 7
UniProt ID: Q16629
Entrez Gene: 6432
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCHCx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4449343 Peaks: 28220
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 588 (CIMS, deletion) ; 725 (CIMS, insertion); 10524 (CIMS, substitution); 4931 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SRSF7.0
  • GAACTTC
    		•  165.9329425 349 0.75 (3/4) 0.3125
    1 K562.SRSF7.6
  • ACTTCGA
    		•  151.1722289 286 0.888888889 (8/9) 0.01953125
    2 K562.SRSF7.4
  • AGATCGT
    		•  95.21341285 118 0.5 (2/4) 0.6875
    3 K562.SRSF7.1
  • AGAGACT
    		•  84.64177917 121 0.7 (7/10) 0.171875
    3 K562.SRSF7.9
  • GAGATCT
    		•  104.3627984 169 1 (1/1) 0.5
    4 K562.SRSF7.7
  • AAGATGA
    		•  98.66814929 168 0.4 (2/5) 0.8125
    5 K562.SRSF7.3
  • AAGAACA
    		•  80.44820969 112 0.285714286 (2/7) 0.9375
    5 K562.SRSF7.5
  • GAAGAAA
    		•  72.03975621 109 0.75 (3/4) 0.3125
    6 K562.SRSF7.8
  • AGAAACG
    		•  64.91037593 65 1 (3/3) 0.125
    7 K562.SRSF7.2
  • CATCGAG
    		•  151.5493353 307 0.714285714 (5/7) 0.2265625