Data and motif summary of RBP SRSF1

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RBP summary

RBP Name: SRSF1
RBP description: Serine And Arginine Rich Splicing Factor 1
UniProt ID: Q07955
Entrez Gene: 6426
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 8009875 Peaks: 41210
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 684 (CIMS, deletion) ; 1257 (CIMS, insertion); 18543 (CIMS, substitution); 7778 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SRSF1.0
  • TGGATCT
    		•  201.7532421 604 0.615384615 (8/13) 0.290527344
    1 K562.SRSF1.6
  • TTGGATC
    		•  145.6678237 375 0.5 (7/14) 0.604736328
    2 K562.SRSF1.1
  • ATGGACT
  • ATGGACC
    		•  209.7968504 728 0.5 (12/24) 0.580590129
    2 K562.SRSF1.4
  • CATGGAC
    		•  161.4998163 393 0.5 (9/18) 0.592735291
    2 K562.SRSF1.5
  • TGGACCA
    		•  228.9496497 540 0.444444444 (4/9) 0.74609375
    3 K562.SRSF1.2
  • TCTGGAC
  • TCTGGAA
    		•  297.0151034 1367 0.25 (5/20) 0.994091034
    3 K562.SRSF1.3
  • CTCTGGA
  • ATCTGGA
    		•  322.6450112 1604 0.3 (3/10) 0.9453125