Data and motif summary of RBP SND1

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RBP summary

RBP Name: SND1
RBP description: Staphylococcal Nuclease And Tudor Domain Containing 1
UniProt ID: Q7KZF4
Entrez Gene: 27044
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 11007581 Peaks: 37808
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1271 (CIMS, deletion) ; 1937 (CIMS, insertion); 30111 (CIMS, substitution); 11484 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SND1.0
  • TATGGCC
    		•  74.72732526 115 0.590909091 (13/22) 0.261733532
    2 K562.SND1.4
  • TATCATC
    		•  86.32264791 172 0.5 (7/14) 0.604736328
    3 K562.SND1.1
  • TACCTAC
    		•  73.31810336 123 0.545454545 (6/11) 0.5
    3 K562.SND1.9
  • ACCTACG
    		•  57.92148566 68 0.583333333 (7/12) 0.387207031
    4 K562.SND1.2
  • CTACACA
    		•  81.01046924 126 0.6 (12/20) 0.251722336
    4 K562.SND1.8
  • ACTACGC
    		•  59.57801037 60 0.666666667 (6/9) 0.25390625
    5 K562.SND1.3
  • TTCGAAC
    		•  75.27614935 101 0.571428571 (8/14) 0.395263672
    6 K562.SND1.5
  • CGTGCAT
    		•  57.89840777 53 0.6 (18/30) 0.180797304
    6 K562.SND1.6
  • ATTGCAC
    		•  82.29024596 149 0.538461538 (7/13) 0.5
    7 K562.SND1.7
  • GTTCACG
    		•  59.56689663 72 0.727272727 (16/22) 0.026239395