Data and motif summary of RBP SMNDC1

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RBP summary

RBP Name: SMNDC1
RBP description: Survival Motor Neuron Domain Containing 1
UniProt ID: O75940
Entrez Gene: 10285
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 8758252 Peaks: 25003
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1325 (CIMS, deletion) ; 4246 (CIMS, insertion); 23454 (CIMS, substitution); 9700 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SMNDC1.0
  • ACTGACA
  • ACTGACT
  • TCTGACT
  • ATTGACT
  • ACTAACA
    		•  107.2512559 438 0.578947368 (11/19) 0.323802948
    1 K562.SMNDC1.3
  • CTGACAC
    		•  73.46895313 118 0.411764706 (7/17) 0.833847046
    1 K562.SMNDC1.4
  • CTAACAT
    		•  75.13622095 114 0.8 (4/5) 0.1875
    2 K562.SMNDC1.1
  • TATTGAC
  • TACTGAC
    		•  92.07397997 195 0.5 (6/12) 0.612792969
    3 K562.SMNDC1.2
  • TCTAGGT
    		•  77.01839114 141 0.4 (4/10) 0.828125