Data and motif summary of RBP SLBP

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RBP summary

RBP Name: SLBP
RBP description: Stem-Loop Binding Protein
UniProt ID: Q14493
Entrez Gene: 7884
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 625182 Peaks: 979
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 196 (CIMS, deletion) ; 297 (CIMS, insertion); 1361 (CIMS, substitution); 430 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SLBP.0
  • AAAGGCT
    		•  34.33162498 15 1 (1/1) 0.5
    1 K562.SLBP.1
  • AAGGCTC
    		•  28.10007891 7 NA (0/0) NA
    1 K562.SLBP.4
  • CAAAGGC
    		•  32.09011599 10 NA (0/0) NA
    2 K562.SLBP.9
  • TGCCATT
    		•  27.36966918 5 NA (0/0) NA
    3 K562.SLBP.8
  • CCCAAAG
    		•  32.51056926 8 1 (1/1) 0.5
    4 K562.SLBP.2
  • GGCTCTT
    		•  26.59155891 6 NA (0/0) NA
    4 K562.SLBP.5
  • AGGCTCT
    		•  25.42372075 7 1 (1/1) 0.5
    4 K562.SLBP.7
  • GAGCCAC
    		•  19.07486987 2 NA (0/0) NA
    5 K562.SLBP.3
  • TCAGAGC
    		•  28.44649887 6 NA (0/0) NA
    5 K562.SLBP.6
  • TTCAGAG
    		•  30.10044 7 NA (0/0) NA