Data and motif summary of RBP SF3B4

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RBP summary

RBP Name: SF3B4
RBP description: Splicing Factor 3b Subunit 4
UniProt ID: Q15427
Entrez Gene: 10262
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 5741535 Peaks: 42679
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 862 (CIMS, deletion) ; 1861 (CIMS, insertion); 13754 (CIMS, substitution); 20106 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SF3B4.0
  • TTTCAGG
  • TTTCAGA
  • TTTTAGG
  • TTCTAGG
  • TTGCAGG
    		•  254.0057376 2287 0.578947368 (11/19) 0.323802948
    1 K562.SF3B4.1
  • TCTAGGT
    		•  139.0211599 385 0.583333333 (7/12) 0.387207031
    2 K562.SF3B4.2
  • TTCACAG
  • TTTACAG
  • CTTACAG
  • CTTTCAG
    		•  221.1111453 1558 0.65 (13/20) 0.131587982