Data and motif summary of RBP SF3B1

  1. Home
  2. RBP > SF3B1

RBP summary

RBP Name: SF3B1
RBP description: Splicing Factor 3b Subunit 1
UniProt ID: O75533
Entrez Gene: 23451
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		x(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 775064 Peaks: 3165
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 270 (CIMS, deletion) ; 459 (CIMS, insertion); 2630 (CIMS, substitution); 593 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SF3B1.0
  • AGCTAAC
  • ACCTAAC
    		•  22.84699983 5 NA (0/0) NA
    1 K562.SF3B1.3
  • GCTAACT
    		•  18.09462368 2 0 (0/2) 1
    2 K562.SF3B1.1
  • CTAACTA
    		•  23.07899671 4 1 (1/1) 0.5
    2 K562.SF3B1.5
  • TAACTAG
    		•  21.24734871 3 0.2 (1/5) 0.96875
    2 K562.SF3B1.8
  • AACTAGC
    		•  22.47757543 4 NA (0/0) NA
    3 K562.SF3B1.2
  • ACTAGTC
    		•  21.03536227 2 0 (0/1) 1
    3 K562.SF3B1.6
  • CTAGTCC
    		•  21.09128986 4 NA (0/0) NA
    4 K562.SF3B1.4
  • AGTCCTT
    		•  20.44697864 3 0 (0/1) 1
    5 K562.SF3B1.7
  • AGGCTAT
    		•  22.59515657 7 1 (3/3) 0.125