Data and motif summary of RBP SERBP1

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RBP summary

RBP Name: SERBP1
RBP description: SERPINE1 MRNA Binding Protein 1
UniProt ID: Q8NC51
Entrez Gene: 26135
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 471929 Peaks: 1569
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 68 (CIMS, deletion) ; 93 (CIMS, insertion); 446 (CIMS, substitution); 355 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SERBP1.0
  • GTTCAAA
    		•  22.04302247 6 1 (1/1) 0.5
    2 K562.SERBP1.6
  • AGTTTAC
    		•  24.7268913 4 NA (0/0) NA
    3 K562.SERBP1.1
  • AAACCTA
    		•  22.44892002 5 NA (0/0) NA
    3 K562.SERBP1.3
  • ACCCTAT
    		•  22.46181673 7 NA (0/0) NA
    4 K562.SERBP1.4
  • AGGCGTA
    		•  20.05511607 2 NA (0/0) NA
    5 K562.SERBP1.2
  • ATATCCA
    		•  21.26118867 4 NA (0/0) NA
    6 K562.SERBP1.5
  • TGCTAGA
    		•  25.05301343 3 NA (0/0) NA