Data and motif summary of RBP SBDS

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RBP summary

RBP Name: SBDS
RBP description: SBDS, Ribosome Maturation Factor
UniProt ID: Q9Y3A5
Entrez Gene: 51119
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3 (nucleolus)(HepG2)
4 (nucleolus)(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 1322443 Peaks: 2236
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 227 (CIMS, deletion) ; 728 (CIMS, insertion); 2981 (CIMS, substitution); 971 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SBDS.0
  • GGCTCCA
    		•  24.19436838 8 1 (1/1) 0.5
    2 K562.SBDS.3
  • TCTGACA
    		•  34.57579351 18 0.5 (1/2) 0.75
    3 K562.SBDS.1
  • TAAATCG
    		•  25.88432217 6 NA (0/0) NA
    3 K562.SBDS.5
  • AAATCGG
    		•  25.8082955 7 NA (0/0) NA
    3 K562.SBDS.8
  • CTAAATC
    		•  30.89026385 12 NA (0/0) NA
    4 K562.SBDS.7
  • AATCGGC
    		•  20.39815043 4 NA (0/0) NA
    5 K562.SBDS.6
  • TATACTC
    		•  23.50369694 7 NA (0/0) NA
    6 K562.SBDS.2
  • CCGCGTT
    		•  26.73040581 8 0.5 (2/4) 0.6875
    6 K562.SBDS.9
  • CCCGCGT
    		•  29.77565145 12 1 (1/1) 0.5
    7 K562.SBDS.4
  • GCGTTCT
    		•  24.49325578 7 1 (2/2) 0.25