Data and motif summary of RBP SAFB2

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RBP summary

RBP Name: SAFB2
RBP description: Scaffold Attachment Factor B2
UniProt ID: Q14151
Entrez Gene: 9667
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 22922550 Peaks: 72055
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2658 (CIMS, deletion) ; 2812 (CIMS, insertion); 65431 (CIMS, substitution); 19386 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.SAFB2.0
  • AGGGCAA
    		•  129.0262133 239 0.454545455 (10/22) 0.738266468
    1 K562.SAFB2.6
  • CAGGGAA
    		•  266.843227 738 0.492063492 (31/63) 0.599346754
    2 K562.SAFB2.7
  • AGAGGCA
    		•  178.9774475 437 0.563636364 (31/55) 0.209377094
    3 K562.SAFB2.1
  • TAAGGAG
    		•  332.0489616 1262 0.56626506 (47/83) 0.136134473
    3 K562.SAFB2.4
  • AGGGAGA
    		•  461.6843859 2658 0.516129032 (64/124) 0.393873291
    4 K562.SAFB2.2
  • AGGAAGG
    		•  371.415052 2096 0.455882353 (31/68) 0.80193758
    4 K562.SAFB2.5
  • AAGGAAG
  • AAGGGAG
    		•  478.1211642 3289 0.547445255 (75/137) 0.152621389
    5 K562.SAFB2.3
  • GGAAAGA
    		•  189.1237521 610 0.435483871 (27/62) 0.873572803
    6 K562.SAFB2.8
  • GGAGTGT
    		•  195.1672703 557 0.447368421 (17/38) 0.791153905