Data and motif summary of RBP RBM27

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RBP summary

RBP Name: RBM27
RBP description: RNA Binding Motif Protein 27
UniProt ID: Q9P2N5
Entrez Gene: 54439
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCCHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 3853990 Peaks: 9163
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 409 (CIMS, deletion) ; 605 (CIMS, insertion); 8631 (CIMS, substitution); 1505 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.RBM27.0
  • CGCGCAT
    		•  28.60607903 9 0.555555556 (5/9) 0.5
    1 K562.RBM27.1
  • ATTAGCG
    		•  26.82982114 9 1 (3/3) 0.125
    2 K562.RBM27.2
  • TGTACTC
    		•  31.13814907 12 0 (0/1) 1
    3 K562.RBM27.3
  • CTCGTGT
    		•  34.3435875 15 0.642857143 (9/14) 0.211975098
    4 K562.RBM27.4
  • GTGACGT
    		•  36.18099947 11 0 (0/1) 1