Data and motif summary of RBP PUM2

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RBP summary

RBP Name: PUM2
RBP description: Pumilio RNA Binding Family Member 2
UniProt ID: Q8TB72
Entrez Gene: 23369
Species: Homo Sapiens
Protein domains: PUMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4314871 Peaks: 18721
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1221 (CIMS, deletion) ; 1154 (CIMS, insertion); 8447 (CIMS, substitution); 6431 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.PUM2.0
  • TGTACAG
  • TGTACAT
  • TGTATAT
  • TGTACAA
    		•  374.8431186 2526 0.466666667 (7/15) 0.696380615
    1 K562.PUM2.1
  • TTGTACA
  • CTGTACA
  • GTGTACA
  • ATGTACA
    		•  368.0471196 1836 0.6 (9/15) 0.303619385
    2 K562.PUM2.2
  • GTACAGA
  • GTACAAA
    		•  257.3104898 736 0.625 (10/16) 0.227249146