Data and motif summary of RBP PTBP1

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RBP summary

RBP Name: PTBP1
RBP description: Polypyrimidine Tract Binding Protein 1
UniProt ID: P26599
Entrez Gene: 5725
Species: Homo Sapiens
Protein domains: RRMx4
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 6341416 Peaks: 32265
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 607 (CIMS, deletion) ; 960 (CIMS, insertion); 12928 (CIMS, substitution); 8875 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.PTBP1.0
  • TCTTCTC
  • TCTTCTT
    		•  523.1300152 3945 0.666666667 (2/3) 0.5
    1 K562.PTBP1.2
  • TCTCTTC
    		•  402.2126461 2074 1 (1/1) 0.5
    1 K562.PTBP1.5
  • CTCTTCT
  • TTCTTCT
    		•  525.4079991 4153 NA (0/0) NA
    2 K562.PTBP1.1
  • TCTCTCT
    		•  559.3700005 3638 0.5 (2/4) 0.6875
    3 K562.PTBP1.3
  • CCTTTCT
    		•  506.2832356 2774 0.5 (1/2) 0.75
    3 K562.PTBP1.4
  • CTTTCTC
    		•  519.8710533 3276 0.666666667 (2/3) 0.5
    3 K562.PTBP1.6
  • TCCTTTC
    		•  502.4033787 2909 0.666666667 (2/3) 0.5
    4 K562.PTBP1.7
  • CTCTTTC
    		•  507.4301449 2992 0.5 (1/2) 0.75