Data and motif summary of RBP PRPF8

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RBP summary

RBP Name: PRPF8
RBP description: Pre-MRNA Processing Factor 8
UniProt ID: Q6P2Q9
Entrez Gene: 10594
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 11042849 Peaks: 67367
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 822 (CIMS, deletion) ; 1649 (CIMS, insertion); 28539 (CIMS, substitution); 28222 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.PRPF8.0
  • TCAAGGT
  • TTAAGGT
  • TTCAGGT
  • TCCAGGT
  • TACAGGT
    		•  529.4258342 5156 0.661538462 (43/65) 0.006251273
    1 K562.PRPF8.1
  • TAAGGTA
  • TCAGGTA
    		•  389.0511545 2542 0.571428571 (32/56) 0.174840976
    2 K562.PRPF8.2
  • GTAAGTG
    		•  373.9484831 1958 0.684210526 (13/19) 0.083534241
    2 K562.PRPF8.3
  • GGTATGT
    		•  241.9017809 995 0.571428571 (16/28) 0.285794094
    3 K562.PRPF8.4
  • GTGAGTA
    		•  394.0207648 1968 0.517241379 (15/29) 0.5