Data and motif summary of RBP NPM1

  1. Home
  2. RBP > NPM1

RBP summary

RBP Name: NPM1
RBP description: Nucleophosmin 1
UniProt ID: P06748
Entrez Gene: 4869
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1 (nucleolus)(HepG2)
1 (nucleolus)(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 2348765 Peaks: 3405
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 304 (CIMS, deletion) ; 1899 (CIMS, insertion); 5430 (CIMS, substitution); 2124 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.NPM1.0
  • ACACTTG
    		•  50.93780802 32 1 (1/1) 0.5
    2 K562.NPM1.7
  • TTGCACA
    		•  39.30252591 30 0.5 (3/6) 0.65625
    3 K562.NPM1.1
  • CTTAGAT
    		•  54.49815271 53 NA (0/0) NA
    3 K562.NPM1.5
  • GCTTAGA
    		•  59.16719495 48 0 (0/1) 1
    3 K562.NPM1.6
  • CTCTGAG
    		•  39.81720975 23 1 (1/1) 0.5
    4 K562.NPM1.2
  • GCCAGAT
    		•  58.01321935 57 0.333333333 (1/3) 0.875
    4 K562.NPM1.3
  • TCTGACA
    		•  33.79545458 19 NA (0/0) NA
    5 K562.NPM1.8
  • ACTGACT
    		•  29.7030179 11 1 (1/1) 0.5
    6 K562.NPM1.4
  • ACTCCCA
    		•  39.95761141 22 0.25 (1/4) 0.9375
    7 K562.NPM1.9
  • CGTAGTA
    		•  24.98514957 9 0.5 (1/2) 0.75