Data and motif summary of RBP NCBP2

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RBP summary

RBP Name: NCBP2
RBP description: Nuclear Cap Binding Protein Subunit 2
UniProt ID: P52298
Entrez Gene: 22916
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 3722781 Peaks: 12821
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 547 (CIMS, deletion) ; 1084 (CIMS, insertion); 7846 (CIMS, substitution); 2733 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.NCBP2.0
  • GCCATTT
    		•  66.63348304 71 1 (3/3) 0.125
    1 K562.NCBP2.6
  • GATGGCG
    		•  49.8364546 30 0.2 (1/5) 0.96875
    2 K562.NCBP2.1
  • CGGTAGT
  • CGGAAGT
    		•  38.23650253 31 0.5 (3/6) 0.65625
    2 K562.NCBP2.5
  • CCCGGTA
    		•  30.69789709 16 0.666666667 (2/3) 0.5
    3 K562.NCBP2.7
  • CGGTCGC
    		•  38.88623224 20 0.25 (2/8) 0.96484375
    4 K562.NCBP2.2
  • TAGCGCG
    		•  36.48970592 15 0.428571429 (3/7) 0.7734375
    4 K562.NCBP2.8
  • TCGCGTA
    		•  25.09751924 7 1 (2/2) 0.25
    5 K562.NCBP2.3
  • GGCCGTA
    		•  35.52389124 18 0.571428571 (4/7) 0.5
    5 K562.NCBP2.4
  • CGGCGGT
    		•  87.64261933 58 0 (0/3) 1