Data and motif summary of RBP LSM11

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RBP summary

RBP Name: LSM11
RBP description: LSM11, U7 Small Nuclear RNA Associated
UniProt ID: P83369
Entrez Gene: 134353
Species: Homo Sapiens
Protein domains: LSmx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 8755918 Peaks: 20798
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1052 (CIMS, deletion) ; 2354 (CIMS, insertion); 22503 (CIMS, substitution); 8966 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.LSM11.0
  • GTAACAC
    		•  64.99527204 65 0.714285714 (10/14) 0.089782715
    1 K562.LSM11.5
  • TGTAACA
    		•  109.2122941 195 0.625 (5/8) 0.36328125
    1 K562.LSM11.6
  • TAACACT
    		•  83.65126885 125 0.8 (4/5) 0.1875
    2 K562.LSM11.1
  • AGCTGTA
    		•  63.51954672 74 0.4 (6/15) 0.849121094
    2 K562.LSM11.2
  • GCTGTAA
    		•  59.66085165 73 0.6 (9/15) 0.303619385
    2 K562.LSM11.3
  • CTGTAAC
    		•  68.58279081 99 0.647058824 (11/17) 0.166152954
    3 K562.LSM11.4
  • GAGCTGT
    		•  75.25975946 114 0.272727273 (3/11) 0.967285156
    3 K562.LSM11.8
  • AGAGCTG
    		•  72.00043575 108 0.363636364 (4/11) 0.88671875
    4 K562.LSM11.7
  • AAGAGCT
    		•  69.0903919 96 0.5 (8/16) 0.598190308
    4 K562.LSM11.9
  • AAAGAGC
    		•  55.51121717 65 0.714285714 (5/7) 0.2265625