Data and motif summary of RBP LIN28B

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RBP summary

RBP Name: LIN28B
RBP description: Lin-28 Homolog B
UniProt ID: Q6ZN17
Entrez Gene: 389421
Species: Homo Sapiens
Protein domains: CSDx1; Znf_CCHCx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 6017864 Peaks: 47211
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1200 (CIMS, deletion) ; 1485 (CIMS, insertion); 17548 (CIMS, substitution); 23002 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.LIN28B.0
  • ATGATAT
  • ATGATAC
    		•  382.6114776 2734 0.444444444 (4/9) 0.74609375
    1 K562.LIN28B.1
  • GATGATA
  • TATGATA
    		•  388.6476194 2946 0.5 (7/14) 0.604736328
    1 K562.LIN28B.2
  • GTATGAT
    		•  331.2416242 1615 0.666666667 (4/6) 0.34375
    1 K562.LIN28B.4
  • TGATACC
    		•  263.6301486 1000 0.6 (3/5) 0.5
    2 K562.LIN28B.3
  • TGGTGAT
  • TGATGAT
  • TGGAGAT
    		•  366.7045275 3802 0.428571429 (9/21) 0.808344841
    2 K562.LIN28B.5
  • GAGTGAT
    		•  254.2385559 1101 0.428571429 (3/7) 0.7734375