Data and motif summary of RBP LARP7

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RBP summary

RBP Name: LARP7
RBP description: La Ribonucleoprotein Domain Family Member 7
UniProt ID: Q4G0J3
Entrez Gene: 51574
Species: Homo Sapiens
Protein domains: RRMx2; Lax1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 1001653 Peaks: 3338
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 291 (CIMS, deletion) ; 409 (CIMS, insertion); 2819 (CIMS, substitution); 728 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.LARP7.0
  • GACTCTA
    		•  27.08261202 6 NA (0/0) NA
    2 K562.LARP7.6
  • ACGCTCA
    		•  19.07486987 2 NA (0/0) NA
    3 K562.LARP7.2
  • TAAGGCC
    		•  28.84325467 10 0 (0/1) 1
    3 K562.LARP7.5
  • AGCCTAA
    		•  21.24734871 3 0 (0/1) 1
    4 K562.LARP7.1
  • TACCGTA
    		•  17.64649618 1 NA (0/0) NA
    4 K562.LARP7.3
  • CCGTAAT
    		•  24.54281028 5 NA (0/0) NA
    5 K562.LARP7.7
  • TAATACG
    		•  17.64649618 1 NA (0/0) NA
    6 K562.LARP7.8
  • GTATCTG
    		•  28.05051958 8 1 (1/1) 0.5
    7 K562.LARP7.4
  • GTGCTAT
    		•  23.86385307 4 NA (0/0) NA
    8 K562.LARP7.9
  • TCCTACT
    		•  34.68112347 17 0 (0/1) 1