Data and motif summary of RBP LARP4

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RBP summary

RBP Name: LARP4
RBP description: La Ribonucleoprotein Domain Family Member 4
UniProt ID: Q71RC2
Entrez Gene: 113251
Species: Homo Sapiens
Protein domains: Lax1; RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4145339 Peaks: 12044
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 798 (CIMS, deletion) ; 1990 (CIMS, insertion); 10872 (CIMS, substitution); 3695 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.LARP4.0
  • GTACACG
    		•  30.96505487 18 0 (0/3) 1
    1 K562.LARP4.1
  • CTAACGA
    		•  27.48440357 9 0.333333333 (1/3) 0.875
    2 K562.LARP4.2
  • TAAACCG
    		•  39.32191966 24 0.5 (3/6) 0.65625
    3 K562.LARP4.3
  • CGCATAT
    		•  32.90734214 18 1 (1/1) 0.5