Data and motif summary of RBP KHSRP

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RBP summary

RBP Name: KHSRP
RBP description: KH-Type Splicing Regulatory Protein
UniProt ID: Q92945
Entrez Gene: 8570
Species: Homo Sapiens
Protein domains: KHx4
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 30805550 Peaks: 150351
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 3797 (CIMS, deletion) ; 3184 (CIMS, insertion); 69563 (CIMS, substitution); 78211 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.KHSRP.0
  • TTGATGT
    		•  604.0529617 6194 0.650406504 (80/123) 0.000542214
    1 K562.KHSRP.1
  • TGATGTT
  • TGTTGTT
    		•  830.4052523 13274 0.647058824 (253/391) 3.20E-09
    2 K562.KHSRP.5
  • ATTGTGT
    		•  562.0112009 5326 0.581168831 (179/308) 0.002577273
    2 K562.KHSRP.6
  • ATTGTTG
    		•  607.3928572 6083 0.660714286 (148/224) 8.62E-07
    3 K562.KHSRP.7
  • GTAATGT
    		•  465.3466455 3472 0.681318681 (124/182) 5.59E-07
    4 K562.KHSRP.4
  • ATGTGAT
  • ATGTGTT
    		•  632.9923387 7362 0.64075067 (239/373) 2.99E-08
    5 K562.KHSRP.2
  • GTTATTG
    		•  644.7079194 6870 0.656716418 (88/134) 0.00017973
    6 K562.KHSRP.3
  • GCTGTAT
    		•  287.9834871 1157 0.758333333 (91/120) 6.09E-09