Data and motif summary of RBP KHDRBS1

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RBP summary

RBP Name: KHDRBS1
RBP description: KH RNA Binding Domain Containing, Signal Transduction Associated 1
UniProt ID: Q07666
Entrez Gene: 10657
Species: Homo Sapiens
Protein domains: KHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 22039785 Peaks: 60687
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1901 (CIMS, deletion) ; 3454 (CIMS, insertion); 49262 (CIMS, substitution); 44547 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.KHDRBS1.0
  • TAATAAG
  • TAAAAAG
    		•  1000.122418 16131 0.737704918 (45/61) 0.000132139
    1 K562.KHDRBS1.1
  • AAAAAGT
  • AATAAGT
  • AATAAGA
    		•  872.1990601 12412 0.744444444 (67/90) 1.90E-06
    2 K562.KHDRBS1.2
  • ATATAAA
  • ATAAAAA
  • ATAATAA
  • TTAATAA
    		•  1175.675382 31060 0.657894737 (50/76) 0.00395259
    2 K562.KHDRBS1.3
  • CATATAA
    		•  391.3243793 2143 0.672413793 (78/116) 0.000129131