Data and motif summary of RBP ILF3

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RBP summary

RBP Name: ILF3
RBP description: Interleukin Enhancer Binding Factor 3
UniProt ID: Q12906
Entrez Gene: 3609
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1 (nucleolus)(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 14804217 Peaks: 48210
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1248 (CIMS, deletion) ; 1904 (CIMS, insertion); 47170 (CIMS, substitution); 23133 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.ILF3.0
  • CATCCCT
    		•  129.6164369 253 0.592592593 (16/27) 0.221034169
    1 K562.ILF3.6
  • ATCCCTG
    		•  97.52059567 182 0.49137931 (57/116) 0.609630436
    2 K562.ILF3.5
  • CCCATCC
    		•  139.5967817 217 0.454545455 (5/11) 0.725585938
    3 K562.ILF3.1
  • CACTTCC
    		•  131.4233568 205 0.666666667 (14/21) 0.094623566
    4 K562.ILF3.2
  • TCCCTTC
  • TCCCATC
  • TCCCCTC
    		•  241.6241477 1059 1 (6/6) 0.015625
    4 K562.ILF3.7
  • CCCTTCT
    		•  196.9535965 642 0.652173913 (15/23) 0.105019808
    5 K562.ILF3.4
  • CCCTCTT
    		•  189.325795 581 0.642857143 (9/14) 0.211975098
    6 K562.ILF3.3
  • CCTACCC
    		•  143.5309543 230 0.466666667 (7/15) 0.696380615