Data and motif summary of RBP IGF2BP1

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RBP summary

RBP Name: IGF2BP1
RBP description: Insulin Like Growth Factor 2 MRNA Binding Protein 1
UniProt ID: Q9NZI8
Entrez Gene: 10642
Species: Homo Sapiens
Protein domains: RRMx2; KHx4
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 5496393 Peaks: 61048
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 707 (CIMS, deletion) ; 1050 (CIMS, insertion); 14461 (CIMS, substitution); 12770 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.IGF2BP1.0
  • CATTCCA
    		•  133.3357661 326 0.777777778 (7/9) 0.08984375
    2 K562.IGF2BP1.2
  • CAATTCA
  • CAATACA
    		•  106.3247053 298 0.722222222 (13/18) 0.048126221
    2 K562.IGF2BP1.8
  • ATTCAAC
    		•  122.7466863 314 0.583333333 (7/12) 0.387207031
    3 K562.IGF2BP1.4
  • CCAGTCA
    		•  70.4456511 113 0.692307692 (9/13) 0.133422852
    4 K562.IGF2BP1.5
  • CCATATC
    		•  108.1287631 222 0.5 (5/10) 0.623046875
    5 K562.IGF2BP1.6
  • TCCACAA
    		•  112.7339818 254 0.7 (7/10) 0.171875
    5 K562.IGF2BP1.7
  • CCACAAC
    		•  86.643225 153 0.6875 (11/16) 0.105056763
    6 K562.IGF2BP1.1
  • CATACAG
    		•  66.12390953 98 0.529411765 (9/17) 0.5
    6 K562.IGF2BP1.3
  • TCAAACA
    		•  113.2152492 241 1 (9/9) 0.001953125