Data and motif summary of RBP HNRNPU

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RBP summary

RBP Name: HNRNPU
RBP description: Heterogeneous Nuclear Ribonucleoprotein U
UniProt ID: Q00839
Entrez Gene: 3192
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 35604505 Peaks: 97093
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 3697 (CIMS, deletion) ; 5367 (CIMS, insertion); 106314 (CIMS, substitution); 35926 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.HNRNPU.0
  • TAAGGAG
    		•  531.4196054 3135 0.555555556 (55/99) 0.157439946
    2 K562.HNRNPU.2
  • TAGGAAG
    		•  529.2514737 3455 0.530769231 (69/130) 0.269709776
    2 K562.HNRNPU.7
  • AGGAAGG
    		•  567.3766406 4859 0.537037037 (58/108) 0.250383197
    3 K562.HNRNPU.1
  • AGAGCAC
    		•  151.9829259 344 0.518518519 (28/54) 0.445961576
    3 K562.HNRNPU.4
  • AGCACAC
    		•  108.4174746 178 0.551020408 (27/49) 0.284086206
    3 K562.HNRNPU.6
  • GAGCATA
    		•  174.5422777 419 0.646341463 (53/82) 0.005318744
    4 K562.HNRNPU.3
  • AGGTCAC
  • AGGTCAG
    		•  232.7567109 876 0.526315789 (20/38) 0.43570734
    4 K562.HNRNPU.5
  • GTCACAG
    		•  145.6674202 373 0.495934959 (61/123) 0.571507836
    4 K562.HNRNPU.8
  • GGTCAGA
    		•  148.3798478 379 0.633663366 (64/101) 0.004667524