Data and motif summary of RBP HNRNPM

  1. Home
  2. RBP > HNRNPM

RBP summary

RBP Name: HNRNPM
RBP description: Heterogeneous Nuclear Ribonucleoprotein M
UniProt ID: P52272
Entrez Gene: 4670
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 6702935 Peaks: 61414
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1257 (CIMS, deletion) ; 1251 (CIMS, insertion); 18726 (CIMS, substitution); 15407 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.HNRNPM.0
  • TTGTGGC
    		•  248.4168437 1250 0.6875 (22/32) 0.02505123
    1 K562.HNRNPM.2
  • TGTGGCT
    		•  213.528771 953 0.578947368 (22/38) 0.208846095
    2 K562.HNRNPM.1
  • CTGTGGT
    		•  215.3978955 995 0.722222222 (26/36) 0.005665492
    2 K562.HNRNPM.3
  • TGTGGTC
    		•  193.0990218 784 0.630434783 (29/46) 0.051902678
    3 K562.HNRNPM.6
  • CGTGGTT
    		•  127.8728711 338 0.666666667 (14/21) 0.094623566
    4 K562.HNRNPM.4
  • CTTGGTG
    		•  191.0468891 827 0.590909091 (13/22) 0.261733532
    4 K562.HNRNPM.5
  • CTGGTGT
    		•  188.1531851 803 0.657142857 (23/35) 0.044765539
    4 K562.HNRNPM.7
  • GCTTGTG
    		•  192.6216348 805 0.6 (24/40) 0.134093626
    4 K562.HNRNPM.9
  • TCTGGTG
    		•  223.8294158 1091 0.633333333 (19/30) 0.100244211
    5 K562.HNRNPM.8
  • TTGGCTG
    		•  257.9162026 1240 0.5 (21/42) 0.561192836