Data and motif summary of RBP HNRNPK

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RBP summary

RBP Name: HNRNPK
RBP description: Heterogeneous Nuclear Ribonucleoprotein K
UniProt ID: P61978
Entrez Gene: 3190
Species: Homo Sapiens
Protein domains: KHx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4115399 Peaks: 21041
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 294 (CIMS, deletion) ; 560 (CIMS, insertion); 4616 (CIMS, substitution); 2024 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.HNRNPK.0
  • CCCATCC
    		•  125.3423134 223 0.777777778 (7/9) 0.08984375
    1 K562.HNRNPK.5
  • TCCCATC
    		•  111.1953173 205 0.909090909 (10/11) 0.005859375
    1 K562.HNRNPK.8
  • ATCCCAT
    		•  91.71004045 104 0.666666667 (4/6) 0.34375
    2 K562.HNRNPK.4
  • CCCAGTC
    		•  90.37871329 127 0.818181818 (9/11) 0.032714844
    3 K562.HNRNPK.2
  • CATCCCT
    		•  104.9273186 169 0.6 (12/20) 0.251722336
    3 K562.HNRNPK.6
  • ATCCCTC
    		•  85.7719239 107 0.666666667 (8/12) 0.193847656
    4 K562.HNRNPK.1
  • CACTTCC
    		•  128.5697152 220 0.5 (3/6) 0.65625
    4 K562.HNRNPK.9
  • ACTTCCC
    		•  122.3523193 201 0.555555556 (5/9) 0.5
    5 K562.HNRNPK.3
  • ATGTCCC
    		•  129.5886781 222 0.620689655 (18/29) 0.132465448
    5 K562.HNRNPK.7
  • AGTCCCC
    		•  74.66024185 101 0.652173913 (15/23) 0.105019808