Data and motif summary of RBP HNRNPA1

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RBP summary

RBP Name: HNRNPA1
RBP description: Heterogeneous Nuclear Ribonucleoprotein A1
UniProt ID: P09651
Entrez Gene: 3178
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 10130485 Peaks: 33110
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 781 (CIMS, deletion) ; 1629 (CIMS, insertion); 21129 (CIMS, substitution); 13035 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.HNRNPA1.0
  • TAAGGAG
  • TAGGGAG
  • TAGGAAG
  • TAGGCAG
  • TAGTCAG
    		•  880.089773 9478 0.604651163 (26/43) 0.11102641
    2 K562.HNRNPA1.1
  • TCAGGGA
    		•  591.5070102 3133 0.685714286 (24/35) 0.020479796
    3 K562.HNRNPA1.2
  • AGTCAGT
  • AGGCAGT
    		•  430.7188811 2603 0.594594595 (22/37) 0.1620043
    3 K562.HNRNPA1.3
  • AGTTCAG
    		•  215.1975774 787 0.727272727 (16/22) 0.026239395
    4 K562.HNRNPA1.4
  • CAGATAG
    		•  198.5159592 608 0.681818182 (30/44) 0.011314421