Data and motif summary of RBP HLTF

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RBP summary

RBP Name: HLTF
RBP description: Helicase Like Transcription Factor
UniProt ID: Q14527
Entrez Gene: 6596
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 10581004 Peaks: 64127
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1037 (CIMS, deletion) ; 2279 (CIMS, insertion); 32528 (CIMS, substitution); 12272 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.HLTF.0
  • CAAGAAA
  • GAAGAAA
  • GAAGCAA
  • CAAGCAA
    		•  201.3742846 1157 0.685714286 (24/35) 0.020479796
    1 K562.HLTF.1
  • AAGAACA
    		•  142.1547372 398 0.655172414 (19/29) 0.068022974
    1 K562.HLTF.2
  • AAGAAAC
    		•  144.9118649 420 0.6 (18/30) 0.180797304
    1 K562.HLTF.5
  • CAAAGAA
    		•  137.7375875 397 0.609756098 (25/41) 0.105511799
    2 K562.HLTF.3
  • AAGAGAA
    		•  149.8456969 479 0.583333333 (14/24) 0.270628095
    3 K562.HLTF.4
  • AAACAAG
    		•  122.7269873 324 0.476190476 (10/21) 0.668188095
    4 K562.HLTF.6
  • AATGAAG
    		•  145.9207978 446 0.666666667 (12/18) 0.118942261